IL_5TCU_118

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_118 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.1596

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5TCU|1|B|G|1710
5TCU|1|B|G|1711
5TCU|1|B|A|1712
5TCU|1|B|A|1713
5TCU|1|B|C|1714
5TCU|1|B|U|1715
5TCU|1|B|C|1716
5TCU|1|B|G|1717
5TCU|1|B|G|1718
*
5TCU|1|B|C|2017
5TCU|1|B|U|2018
5TCU|1|B|G|2019
5TCU|1|B|U|2020
5TCU|1|B|C|2021

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14