IL_5TCU_119

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5TCU|1|B|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_119 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1742

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5TCU|1|B|C|1730
5TCU|1|B|G|1731
5TCU|1|B|U|1732
5TCU|1|B|A|1733
5TCU|1|B|A|1734
5TCU|1|B|C|1735
*
5TCU|1|B|G|1740
5TCU|1|B|G|1741
5TCU|1|B|A|1742
5TCU|1|B|G|1743
5TCU|1|B|A|1744
5TCU|1|B|A|1745
5TCU|1|B|G|1746

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2