IL_5TCU_122

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5TCU|1|B|U|1828, 5TCU|1|B|U|1843, 5TCU|1|B|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_122 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1745

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|B|U|1825
5TCU|1|B|G|1826
5TCU|1|B|C|1827
5TCU|1|B|U|1828
5TCU|1|B|A|1829
5TCU|1|B|A|1830
5TCU|1|B|A|1831
*
5TCU|1|B|U|1840
5TCU|1|B|G|1841
5TCU|1|B|A|1842
5TCU|1|B|U|1843
5TCU|1|B|G|1844
5TCU|1|B|U|1845
5TCU|1|B|A|1846
5TCU|1|B|U|1847
5TCU|1|B|A|1848

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2