IL_5TCU_132

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5TCU|1|B|C|2082, 5TCU|1|B|U|2640, 5TCU|1|B|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_132 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.2226

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|B|A|2081
5TCU|1|B|C|2082
5TCU|1|B|G|2083
*
5TCU|1|B|C|2639
5TCU|1|B|U|2640
5TCU|1|B|A|2641
5TCU|1|B|U|2642

Current chains

Chain B

23S RRNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LC

50S ribosomal protein L3

Chain LE

50S ribosomal protein L32