IL_5TCU_135

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCU*AAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_135 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2158

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5TCU|1|B|G|2110
5TCU|1|B|C|2111
5TCU|1|B|C|2112
5TCU|1|B|U|2113
*
5TCU|1|B|A|2260
5TCU|1|B|A|2261
5TCU|1|B|G|2262
5TCU|1|B|C|2263

Current chains

Chain B

23S RRNA

Nearby chains

Chain L2

50S ribosomal protein L2

Chain LA

50S ribosomal protein L28