IL_5TCU_139

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_139 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.2741

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

5TCU|1|B|C|2324
5TCU|1|B|A|2325
5TCU|1|B|G|2326
*
5TCU|1|B|C|2344
5TCU|1|B|A|2345
5TCU|1|B|U|2346
5TCU|1|B|A|2347
5TCU|1|B|G|2348

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain LK

50S ribosomal protein L5

Chain LR

50S ribosomal protein L18