IL_5TCU_143

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_143 not in the Motif Atlas

Homologous match to IL_4WF9_090

Geometric discrepancy: 0.1261

The information below is about IL_4WF9_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

5TCU|1|B|G|2481
5TCU|1|B|G|2482
*
5TCU|1|B|C|2523
5TCU|1|B|A|2524
5TCU|1|B|C|2525

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LP

50S ribosomal protein L16