IL_5TCU_145

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_145 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1465

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5TCU|1|B|A|2486
5TCU|1|B|U|2487
5TCU|1|B|C|2488
*
5TCU|1|B|G|2516
5TCU|1|B|G|2517
5TCU|1|B|U|2518
5TCU|1|B|U|2519
5TCU|1|B|U|2520

Current chains

Chain B

23S RRNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LP

50S ribosomal protein L16