IL_5TCU_146

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_146 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1605

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5TCU|1|B|C|2493
5TCU|1|B|C|2494
5TCU|1|B|A|2495
5TCU|1|B|A|2496
5TCU|1|B|G|2497
*
5TCU|1|B|C|2507
5TCU|1|B|G|2508
5TCU|1|B|A|2509
5TCU|1|B|C|2510
5TCU|1|B|G|2511

Current chains

Chain B

23S RRNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LP

50S ribosomal protein L16