IL_5TCU_147

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_147 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2373

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

5TCU|1|B|C|2534
5TCU|1|B|G|2535
5TCU|1|B|G|2536
*
5TCU|1|B|C|2606
5TCU|1|B|U|2607
5TCU|1|B|G|2608
5TCU|1|B|G|2609

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3