IL_5TCU_150

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5TCU|1|B|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_150 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.2217

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5TCU|1|B|C|2618
5TCU|1|B|G|2619
*
5TCU|1|B|C|2628
5TCU|1|B|A|2629
5TCU|1|B|G|2630

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain L2

50S ribosomal protein L2

Chain L9

50S ribosomal protein L27