IL_5TCU_156

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5TCU|1|B|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_156 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.2076

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|B|G|2764
5TCU|1|B|A|2765
5TCU|1|B|U|2766
5TCU|1|B|A|2767
5TCU|1|B|A|2768
5TCU|1|B|G|2769
*
5TCU|1|B|U|2789
5TCU|1|B|G|2790
5TCU|1|B|A|2791
5TCU|1|B|A|2792
5TCU|1|B|G|2793
5TCU|1|B|C|2794

Current chains

Chain B

23S RRNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LL

50S ribosomal protein L6

Chain LM

50S ribosomal protein L13