IL_5TCU_157

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

5TCU|1|B|A|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_157 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.118

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

5TCU|1|B|G|2858
5TCU|1|B|G|2859
*
5TCU|1|B|U|2898
5TCU|1|B|A|2899
5TCU|1|B|C|2900

Current chains

Chain B

23S RRNA

Nearby chains

Chain LQ

50S ribosomal protein L17