IL_5TCU_161

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGA*UGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_161 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2166

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5TCU|1|C|G|5
5TCU|1|C|U|6
5TCU|1|C|G|7
5TCU|1|C|A|8
*
5TCU|1|C|U|107
5TCU|1|C|G|108
5TCU|1|C|C|109
5TCU|1|C|C|110

Current chains

Chain C

5S rRNA CHAIN

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LR

50S ribosomal protein L18