IL_5TCU_163
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_163 not in the Motif Atlas
- Geometric match to IL_5NS3_002
- Geometric discrepancy: 0.23
- The information below is about IL_5NS3_002
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
5TCU|1|C|U|32
5TCU|1|C|U|33
5TCU|1|C|C|34
5TCU|1|C|C|35
5TCU|1|C|C|36
*
5TCU|1|C|G|42
5TCU|1|C|A|43
5TCU|1|C|A|44
5TCU|1|C|C|45
5TCU|1|C|A|46
Current chains
- Chain C
- 5S rRNA CHAIN
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 50S ribosomal protein L31 type B
- Chain LK
- 50S ribosomal protein L5
- Chain LR
- 50S ribosomal protein L18
Coloring options: