IL_5TCU_171
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAG*CGCAGAGAU
- Length
- 15 nucleotides
- Bulged bases
- 5TCU|1|A|A|710
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_171 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.2002
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5TCU|1|A|G|691
5TCU|1|A|U|692
5TCU|1|A|G|693
5TCU|1|A|U|694
5TCU|1|A|A|695
5TCU|1|A|G|696
*
5TCU|1|A|C|707
5TCU|1|A|G|708
5TCU|1|A|C|709
5TCU|1|A|A|710
5TCU|1|A|G|711
5TCU|1|A|A|712
5TCU|1|A|G|713
5TCU|1|A|A|714
5TCU|1|A|U|715
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- 30S ribosomal protein S11
Coloring options: