IL_5TCU_184

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUC*GGGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_184 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3605

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|C|882
5TCU|1|B|C|883
5TCU|1|B|U|884
5TCU|1|B|C|885
*
5TCU|1|B|G|982
5TCU|1|B|G|983
5TCU|1|B|G|984
5TCU|1|B|A|985
5TCU|1|B|G|986

Current chains

Chain B

23S RRNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15