IL_5TCU_198

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_198 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3222

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5TCU|1|B|G|2376
5TCU|1|B|C|2377
5TCU|1|B|G|2378
5TCU|1|B|A|2379
5TCU|1|B|G|2380
*
5TCU|1|B|C|2391
5TCU|1|B|G|2392
5TCU|1|B|A|2393
5TCU|1|B|G|2394
5TCU|1|B|C|2395

Current chains

Chain B

23S RRNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LH

50S ribosomal protein L35

Chain LS

50S ribosomal protein L33 1