IL_5TGA_066

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

5TGA|1|1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_066 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.1282

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5TGA|1|1|U|1627
5TGA|1|1|C|1628
5TGA|1|1|U|1629
5TGA|1|1|U|1630
5TGA|1|1|C|1631
*
5TGA|1|1|G|1811
5TGA|1|1|G|1812
5TGA|1|1|A|1813
5TGA|1|1|A|1814
5TGA|1|1|U|1815
5TGA|1|1|A|1816

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N7

60S ribosomal protein L27-A