IL_5TGA_156

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5TGA|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_156 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0962

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5TGA|1|2|G|363
5TGA|1|2|G|364
5TGA|1|2|G|365
*
5TGA|1|2|C|376
5TGA|1|2|G|377
5TGA|1|2|A|378
5TGA|1|2|U|379
5TGA|1|2|U|380
5TGA|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A