IL_5TGA_404

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_404 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.0676

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5TGA|1|6|G|703
5TGA|1|6|C|704
5TGA|1|6|U|705
5TGA|1|6|A|706
5TGA|1|6|A|707
5TGA|1|6|C|708
*
5TGA|1|6|G|730
5TGA|1|6|C|731
5TGA|1|6|G|732
5TGA|1|6|A|733
5TGA|1|6|A|734
5TGA|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains