IL_5TGA_429
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5TGA|1|6|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGA_429 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3204
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5TGA|1|6|A|1224
5TGA|1|6|U|1225
5TGA|1|6|A|1226
5TGA|1|6|A|1227
5TGA|1|6|G|1228
5TGA|1|6|G|1229
5TGA|1|6|A|1230
5TGA|1|6|U|1231
5TGA|1|6|U|1232
5TGA|1|6|G|1233
*
5TGA|1|6|C|1252
5TGA|1|6|U|1253
5TGA|1|6|U|1254
5TGA|1|6|G|1255
5TGA|1|6|A|1256
5TGA|1|6|U|1257
5TGA|1|6|U|1258
5TGA|1|6|U|1259
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A,40S ribosomal protein S10-A,40S Ribosomal Protein S10-A
- Chain c2
- 40S ribosomal protein S12
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
Coloring options: