IL_5TGA_485

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5TGA|1|5|C|1016, 5TGA|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_485 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.3364

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5TGA|1|5|U|1014
5TGA|1|5|U|1015
5TGA|1|5|C|1016
5TGA|1|5|C|1017
5TGA|1|5|G|1018
*
5TGA|1|5|U|1034
5TGA|1|5|G|1035
5TGA|1|5|A|1036

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1