IL_5TGA_511

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_511 not in the Motif Atlas

Geometric match to IL_8P9A_426

Geometric discrepancy: 0.383

The information below is about IL_8P9A_426

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5TGA|1|2|U|1800
5TGA|1|2|U|1801
5TGA|1|2|A|1802
5TGA|1|2|G|1803
*
5TGA|1|2|C|1824
5TGA|1|2|A|1825
5TGA|1|2|G|1826
5TGA|1|2|A|1827

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A