IL_5TGM_041
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUUA*UUCUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_041 not in the Motif Atlas
- Homologous match to IL_8C3A_044
- Geometric discrepancy: 0.1175
- The information below is about IL_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5TGM|1|1|G|1005
5TGM|1|1|A|1006
5TGM|1|1|U|1007
5TGM|1|1|U|1008
5TGM|1|1|A|1009
*
5TGM|1|1|U|1041
5TGM|1|1|U|1042
5TGM|1|1|C|1043
5TGM|1|1|U|1044
5TGM|1|1|C|1045
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M0
- 60S ribosomal protein L10
Coloring options: