IL_5TGM_098

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CC

Length

4 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_098 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.254

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5TGM|1|1|G|2619
5TGM|1|1|G|2620
*
5TGM|1|P|C|74
5TGM|1|P|C|75

Current chains

Chain 1

25S ribosomal RNA

Chain P

Peptidyl-tRNA analog ACCA-Leu-Phe

Nearby chains

Chain M0

60S ribosomal protein L10

Chain N9

60S ribosomal protein L29