IL_5TGM_122

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUA*UUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_122 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.354

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5TGM|1|1|C|3166
5TGM|1|1|A|3167
5TGM|1|1|A|3168
5TGM|1|1|U|3169
5TGM|1|1|A|3170
*
5TGM|1|1|U|3280
5TGM|1|1|U|3281
5TGM|1|1|U|3282
5TGM|1|1|U|3283
5TGM|1|1|G|3284

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O3

60S ribosomal protein L33-A