IL_5TGM_144

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAU*AUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_144 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3625

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5TGM|1|2|G|109
5TGM|1|2|U|110
5TGM|1|2|U|111
5TGM|1|2|A|112
5TGM|1|2|U|113
*
5TGM|1|2|A|301
5TGM|1|2|U|302
5TGM|1|2|U|303
5TGM|1|2|U|304
5TGM|1|2|C|305

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain S4

40S ribosomal protein S4-A

Chain S8

40S ribosomal protein S8