IL_5TGM_164

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_164 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1039

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5TGM|1|2|A|550
5TGM|1|2|G|551
5TGM|1|2|G|552
5TGM|1|2|G|553
5TGM|1|2|C|554
5TGM|1|2|A|555
5TGM|1|2|A|556
5TGM|1|2|G|557
*
5TGM|1|2|C|587
5TGM|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A

Chain SM

Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1