IL_5TGM_170

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_170 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.1823

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5TGM|1|2|C|646
5TGM|1|2|G|647
5TGM|1|2|G|648
*
5TGM|1|2|C|669
5TGM|1|2|G|670
5TGM|1|2|G|671

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A