IL_5TGM_188

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_188 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0825

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5TGM|1|2|G|1094
5TGM|1|2|G|1095
5TGM|1|2|A|1096
5TGM|1|2|G|1097
5TGM|1|2|U|1098
5TGM|1|2|A|1099
5TGM|1|2|U|1100
5TGM|1|2|G|1101
*
5TGM|1|2|U|1112
5TGM|1|2|G|1113
5TGM|1|2|A|1114
5TGM|1|2|A|1115
5TGM|1|2|A|1116
5TGM|1|2|C|1117

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A