IL_5TGM_199
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5TGM|1|2|C|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_199 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1444
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5TGM|1|2|U|1255
5TGM|1|2|G|1256
5TGM|1|2|C|1257
5TGM|1|2|A|1258
5TGM|1|2|U|1259
*
5TGM|1|2|A|1419
5TGM|1|2|U|1420
5TGM|1|2|G|1421
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A,40S Ribosomal Protein S10
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1
Coloring options: