IL_5TGM_207
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_207 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.1555
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
5TGM|1|2|C|1372
5TGM|1|2|U|1373
5TGM|1|2|A|1374
*
5TGM|1|2|U|1390
5TGM|1|2|G|1391
5TGM|1|2|G|1392
5TGM|1|2|A|1393
5TGM|1|2|A|1394
5TGM|1|2|G|1395
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- ES17
- Chain S5
- 40S ribosomal protein S5
- Chain SR
- Guanine nucleotide-binding protein subunit beta-like protein
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