IL_5TGM_256
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_256 not in the Motif Atlas
- Homologous match to IL_5TBW_023
- Geometric discrepancy: 0.1051
- The information below is about IL_5TBW_023
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5TGM|1|5|G|725
5TGM|1|5|G|726
5TGM|1|5|G|727
5TGM|1|5|G|728
*
5TGM|1|5|U|741
5TGM|1|5|G|742
5TGM|1|5|C|743
5TGM|1|5|A|744
5TGM|1|5|C|745
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m8
- 60S ribosomal protein L18-A
- Chain n9
- 60S ribosomal protein L29
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