IL_5TGM_404

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_404 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.0967

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5TGM|1|6|C|708
5TGM|1|6|C|709
5TGM|1|6|U|710
5TGM|1|6|U|711
5TGM|1|6|G|712
*
5TGM|1|6|C|726
5TGM|1|6|U|727
5TGM|1|6|U|728
5TGM|1|6|G|729
5TGM|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains