IL_5TGM_409

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_409 not in the Motif Atlas

Geometric match to IL_4V88_427

Geometric discrepancy: 0.1392

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5TGM|1|6|U|822
5TGM|1|6|G|823
5TGM|1|6|G|824
*
5TGM|1|6|C|848
5TGM|1|6|C|849
5TGM|1|6|A|850

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain m9

60S ribosomal protein L19-A