IL_5TGM_441

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_441 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1416

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5TGM|1|6|C|1495
5TGM|1|6|U|1496
5TGM|1|6|U|1497
5TGM|1|6|G|1498
*
5TGM|1|6|C|1509
5TGM|1|6|U|1510
5TGM|1|6|U|1511
5TGM|1|6|G|1512

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c9

40S ribosomal protein S19-A