IL_5TGM_454
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_454 not in the Motif Atlas
- Geometric match to IL_4V88_474
- Geometric discrepancy: 0.0831
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
5TGM|1|6|A|1678
5TGM|1|6|G|1679
5TGM|1|6|G|1680
5TGM|1|6|A|1681
5TGM|1|6|U|1682
*
5TGM|1|6|A|1719
5TGM|1|6|G|1720
5TGM|1|6|A|1721
5TGM|1|6|A|1722
5TGM|1|6|U|1723
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8
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