IL_5TGM_506
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- ACU*GGAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_506 not in the Motif Atlas
- Geometric match to IL_6CZR_361
- Geometric discrepancy: 0.2807
- The information below is about IL_6CZR_361
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56539.1
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5TGM|1|6|A|746
5TGM|1|6|C|747
5TGM|1|6|U|748
*
5TGM|1|6|G|801
5TGM|1|6|G|802
5TGM|1|6|A|803
5TGM|1|6|A|804
5TGM|1|6|U|805
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A,40S Ribosomal Protein S11
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s7
- 40S ribosomal protein S7-A
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