IL_5TGM_532
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_532 not in the Motif Atlas
- Homologous match to IL_8CRE_462
- Geometric discrepancy: 0.1908
- The information below is about IL_8CRE_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5TGM|1|2|G|1463
5TGM|1|2|C|1464
5TGM|1|2|C|1465
5TGM|1|2|A|1466
5TGM|1|2|G|1467
5TGM|1|2|C|1468
5TGM|1|2|G|1469
5TGM|1|2|A|1470
*
5TGM|1|2|U|1502
5TGM|1|2|U|1503
5TGM|1|2|G|1504
5TGM|1|2|U|1505
5TGM|1|2|G|1506
5TGM|1|2|A|1507
5TGM|1|2|A|1508
5TGM|1|2|A|1509
5TGM|1|2|C|1510
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain S5
- 40S ribosomal protein S5
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