IL_5TZS_006

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_006 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.0004

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

5TZS|1|1|U|117
5TZS|1|1|U|118
5TZS|1|1|A|119
5TZS|1|1|U|120
5TZS|1|1|U|121
5TZS|1|1|U|122
*
5TZS|1|1|A|295
5TZS|1|1|U|296
5TZS|1|1|U|297
5TZS|1|1|C|298
5TZS|1|1|A|299

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain 8

rpS8_eS8