IL_5TZS_009

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

5TZS|1|1|U|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_009 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.0005

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5TZS|1|1|G|204
5TZS|1|1|U|205
5TZS|1|1|A|206
*
5TZS|1|1|U|259
5TZS|1|1|U|260
5TZS|1|1|U|261
5TZS|1|1|U|262
5TZS|1|1|C|263

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain 8

rpS8_eS8