IL_5TZS_011

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

AGG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_011 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.1528

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

5TZS|1|1|A|213
5TZS|1|1|G|214
5TZS|1|1|G|243
*
5TZS|1|1|C|250
5TZS|1|1|A|251
5TZS|1|1|U|252

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6

Chain 5

rpS4_ES4