IL_5TZS_014

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5TZS|1|1|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_014 not in the Motif Atlas

Homologous match to IL_4V88_401

Geometric discrepancy: 0.0006

The information below is about IL_4V88_401

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5TZS|1|1|C|275
5TZS|1|1|C|276
*
5TZS|1|1|G|279
5TZS|1|1|U|280
5TZS|1|1|G|281

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6