IL_5TZS_016

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_016 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.0486

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

5TZS|1|1|U|318
5TZS|1|1|U|319
5TZS|1|1|U|320
5TZS|1|1|C|321
5TZS|1|1|G|322
5TZS|1|1|A|323
*
5TZS|1|1|U|345
5TZS|1|1|G|346

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 8

rpS8_eS8

Chain D

rpS11_uS17

Chain V

Enp2