IL_5TZS_029

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUGAG*CGAUGAUC

Length

13 nucleotides

Bulged bases

5TZS|1|2|U|255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_029 not in the Motif Atlas

Geometric match to IL_3NMU_004

Geometric discrepancy: 0.0925

The information below is about IL_3NMU_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.5

Basepair signature

cWW-tSS-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5TZS|1|2|G|111
5TZS|1|2|U|112
5TZS|1|2|G|113
5TZS|1|2|A|114
5TZS|1|2|G|115
*
5TZS|1|2|C|252
5TZS|1|2|G|253
5TZS|1|2|A|254
5TZS|1|2|U|255
5TZS|1|2|G|256
5TZS|1|2|A|257
5TZS|1|2|U|258
5TZS|1|2|C|259

Current chains

Chain 2

U3 snoRNA

Nearby chains

Chain a

Nop56

Chain f

Snu13

Chain g

Ribosomal RNA-processing protein 9