IL_5U4I_011

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_011 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3153

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5U4I|1|A|C|274
5U4I|1|A|C|275
5U4I|1|A|U|276
5U4I|1|A|G|277
5U4I|1|A|A|278
5U4I|1|A|A|279
5U4I|1|A|U|280
5U4I|1|A|C|281
*
5U4I|1|A|G|359
5U4I|1|A|U|360
5U4I|1|A|G|361
5U4I|1|A|A|362
5U4I|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains