IL_5U4I_021

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_021 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1169

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5U4I|1|A|U|703
5U4I|1|A|G|704
5U4I|1|A|A|705
5U4I|1|A|A|706
5U4I|1|A|G|707
*
5U4I|1|A|U|724
5U4I|1|A|G|725
5U4I|1|A|G|726
5U4I|1|A|A|727
5U4I|1|A|G|728

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2