IL_5U4I_030

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_030 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2912

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

5U4I|1|A|G|869
5U4I|1|A|U|870
5U4I|1|A|U|871
5U4I|1|A|U|872
*
5U4I|1|A|A|905
5U4I|1|A|U|906
5U4I|1|A|G|907
5U4I|1|A|C|908

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16