IL_5U4I_031

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_031 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2916

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5U4I|1|A|G|875
5U4I|1|A|C|876
5U4I|1|A|A|877
5U4I|1|A|A|878
5U4I|1|A|G|879
*
5U4I|1|A|C|898
5U4I|1|A|A|899
5U4I|1|A|A|900
5U4I|1|A|C|901
5U4I|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16